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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
83
ChIP-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
109
Transcription
83
DNA binding
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
57
April, 2019
21
May, 2019
16
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
1
February, 2023
Available data
111
tsv
101
bam
86
bigWig
67
bed narrowPeak
61
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
207
Homo sapiens
Biosample type
207
tissue
58
cell line
10
primary cell
1
in vitro differentiated cells
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
233
brain
207
heart
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
207
AMP
Genome assembly (visualization)
85
GRCh38
84
hg19
Lab
207
AMP-T2D consortium
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
207 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
4
1
1
1
heart right ventricle
17
13
1
2
1
1
right cardiac atrium
18
6
1
1
heart
1
14
4
1
1
1
left cardiac atrium
18
right atrium auricular region
10
3
coronary artery
5
1
aortic valve
4
pulmonary valve
4
tricuspid valve
4
cardiac atrium
2
1
cardiac ventricle
2
1
mitral valve
3
interventricular septum
2
left ventricle myocardium
1
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