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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
total RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
Assay category
22
DNA binding
12
Transcription
3
3D chromatin structure
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
12
February, 2020
7
October, 2017
5
July, 2019
2
March, 2020
2
October, 2019
Available data
bam
187
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
26
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
41
Homo sapiens
Biosample type
37
tissue
4
primary cell
Organ
159
pancreas
127
kidney
126
epithelium
107
heart
89
bone element
89
liver
71
connective tissue
46
adipose tissue
41
brain
37
musculature of body
26
eye
16
vasculature
15
blood vessel
10
lung
8
limb
5
gonad
5
ovary
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bam
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
tissue
brain
7
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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