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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
503
ChIP-seq
189
total RNA-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
503
DNA binding
192
Transcription
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
289
transcription factor
108
control
103
histone modification
102
histone
66
recombinant protein
60
narrow histone mark
42
broad histone mark
39
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
52
August, 2017
November, 2018
35
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
1
December, 2018
1
February, 2020
1
February, 2021
Available data
623
bam
547
bigWig
411
fastq
365
bed narrowPeak
304
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
csv
1
hdf5
1
vcf
Organism
711
Homo sapiens
Biosample type
354
cell line
331
tissue
15
in vitro differentiated cells
11
primary cell
Organ
769
pancreas
711
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
186
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
45
blood
45
bodily fluid
40
nerve
37
embryo
29
eye
19
vein
15
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
711
AMP
Genome assembly (visualization)
551
hg19
474
GRCh38
Lab
660
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
csv
month_released!
November, 2018
BIOSAMPLE
ASSAY
711 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
whole genome sequencing assay
cell line
HepG2
333
14
2
2
2
1
tissue
liver
141
167
1
3
1
1
1
right lobe of liver
10
3
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
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