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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
449
ChIP-seq
189
total RNA-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
449
DNA binding
192
Transcription
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
50
November, 2018
46
December, 2017
29
August, 2021
20
May, 2022
19
August, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
1
December, 2018
1
February, 2020
1
February, 2021
1
October, 2019
Available data
593
bam
513
bigWig
416
fastq
332
bed narrowPeak
317
bigBed narrowPeak
174
tsv
44
bed broadPeak
44
bigBed broadPeak
28
tagAlign
5
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
csv
1
hdf5
1
vcf
Organism
658
Homo sapiens
Biosample type
382
cell line
265
tissue
8
primary cell
3
in vitro differentiated cells
Organ
658
liver
622
pancreas
572
connective tissue
451
adipose tissue
308
epithelium
219
heart
156
kidney
147
bone element
107
vasculature
104
blood vessel
72
artery
62
brain
59
blood
59
bodily fluid
29
limb
28
musculature of body
26
eye
25
embryo
17
spleen
16
nerve
10
lung
4
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
658
AMP
Genome assembly (visualization)
514
hg19
453
GRCh38
Lab
610
AMP-T2D consortium
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
csv
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
658 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
whole genome sequencing assay
cell line
HepG2
360
14
1
2
2
2
1
tissue
liver
80
167
3
1
1
1
1
right lobe of liver
5
3
1
2
primary cell
hepatocyte
1
5
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
3
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