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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
43
ChIP-seq
25
total RNA-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
123
Transcription
DNA accessibility
43
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
363
May, 2021
277
August, 2017
276
October, 2019
241
May, 2020
175
August, 2021
166
July, 2018
127
February, 2021
120
May, 2019
95
May, 2022
94
December, 2017
92
February, 2023
82
July, 2019
80
April, 2019
78
November, 2018
59
September, 2018
56
September, 2020
53
October, 2018
48
March, 2020
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
33
November, 2019
30
January, 2019
23
February, 2020
19
June, 2019
15
October, 2017
10
December, 2019
10
November, 2020
9
April, 2020
6
September, 2017
5
January, 2018
4
March, 2023
3
August, 2018
3
June, 2018
3
May, 2023
Available data
123
tsv
txt
45
bigWig
39
bam
30
bed narrowPeak
24
tagAlign
3
bed bed3+
2
bedpe bed3+
hic
1
vcf
Organism
175
Homo sapiens
Biosample type
100
tissue
43
cell line
28
in vitro differentiated cells
4
primary cell
Organ
92
heart
34
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
pancreas
connective tissue
2
artery
2
kidney
1
adipose tissue
Project
175
AMP
Genome assembly (visualization)
44
hg19
31
GRCh38
Lab
140
AMP-T2D consortium
35
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
hic
txt
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
175 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 9 more…
cell line
HepG2
18
9
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
primary cell
hepatocyte
4
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