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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
978
total RNA-seq
867
ChIP-seq
161
single cell RNA-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1155
Transcription
867
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
448
February, 2021
279
August, 2017
222
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
102
August, 2021
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
38
March, 2020
25
February, 2020
21
May, 2022
20
November, 2019
16
November, 2018
15
October, 2017
10
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1662
bam
1508
bigWig
1075
tsv
555
bed narrowPeak
377
bigBed narrowPeak
336
fastq
238
tagAlign
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2103
Homo sapiens
Biosample type
2111
tissue
800
primary cell
630
cell line
351
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
417
pancreas
336
liver
233
brain
207
heart
90
blood vessel
90
vasculature
87
kidney
78
limb
58
bone element
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2045
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1484
GRCh38
1467
hg19
Lab
2017
AMP-T2D consortium
47
KPMP
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
7
Kyle Gaulton, UCSD
4
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
27
inconsistent control
5
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
txt
BIOSAMPLE
ASSAY
2111 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
71
4
3
1
4
liver
167
145
1
3
1
1
1
1
kidney
27
51
1
1
heart left ventricle
3
35
18
4
1
1
1
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