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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
4
STARR-seq
3
Hi-C
Assay category
18
DNA binding
10
Transcription
3
3D chromatin structure
DNA accessibility
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
34
August, 2021
1
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
vcf
Organism
35
Homo sapiens
Biosample type
32
cell line
3
tissue
Organ
30
liver
3
pancreas
2
kidney
Project
35
AMP
Genome assembly (visualization)
16
hg19
Lab
3055
AMP-T2D consortium
286
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
35
Bing Ren, UCSD
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
vcf
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
cell line
HepG2
18
9
2
1
HEK293T
2
tissue
islet of Langerhans
1
2
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