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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
111
total RNA-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
111
Transcription
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
229
May, 2021
41
May, 2020
10
February, 2023
6
May, 2022
Available data
211
bigWig
182
bam
114
bed narrowPeak
92
tsv
84
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
286
Homo sapiens
Biosample type
226
primary cell
42
in vitro differentiated cells
13
tissue
5
cell line
Organ
12
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
202
T1D
84
AMP
Genome assembly (visualization)
211
hg19
176
GRCh38
Lab
3055
AMP-T2D consortium
286
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
35
Bing Ren, UCSD
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
vcf
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
286 results
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ChIP-seq
total RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
B cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
+ See 28 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
11
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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