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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
120
ChIP-seq
7
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
191
Transcription
120
DNA binding
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
29
control
27
histone
27
histone modification
27
narrow histone mark
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
236
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
315
bam
285
bigWig
189
tsv
90
bed narrowPeak
78
fastq
63
bigBed narrowPeak
50
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
319
Homo sapiens
Biosample type
209
tissue
62
cell line
48
primary cell
Organ
244
liver
15
blood
15
bodily fluid
8
spleen
4
pancreas
Project
274
AMP
45
T1D
Genome assembly (visualization)
277
GRCh38
276
hg19
Lab
274
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
vcf
BIOSAMPLE
ASSAY
319 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
liver
143
54
spleen
6
2
body of pancreas
2
pancreas
2
cell line
HepG2
45
1
1
GM12878
15
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
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