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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
3
ChIP-seq
2
total RNA-seq
1
pCHi-C
Assay category
DNA accessibility
4
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
4
July, 2019
3
August, 2021
2
May, 2021
1
February, 2021
Available data
505
bigWig
495
bam
349
fastq
258
tsv
226
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
10
Homo sapiens
Biosample type
28
tissue
21
in vitro differentiated cells
10
primary cell
3
stem cell
2
cell line
Organ
5
epithelium
4
liver
3
brain
2
blood vessel
2
connective tissue
2
vasculature
Project
10
AMP
Genome assembly (visualization)
10
hg19
3
GRCh38
Lab
8
AMP-T2D consortium
2
Kyle Gaulton, UCSD
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
10 results
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Hi-C
ChIP-seq
total RNA-seq
pCHi-C
primary cell
hepatocyte
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
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