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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
Assay category
DNA accessibility
114
DNA binding
72
Transcription
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
89
February, 2021
70
November, 2017
57
August, 2021
39
August, 2017
6
May, 2022
4
February, 2023
3
October, 2017
2
October, 2019
1
October, 2022
Available data
3003
bam
2779
bigWig
1586
tsv
1285
bed narrowPeak
1256
fastq
801
bigBed narrowPeak
398
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
64
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
264
Homo sapiens
Biosample type
191
tissue
59
cell line
21
primary cell
Organ
88
bone element
62
kidney
58
liver
18
pancreas
15
brain
13
musculature of body
6
epithelium
6
vasculature
4
blood vessel
4
skeleton
2
vein
1
adipose tissue
1
connective tissue
Project
271
AMP
Genome assembly (visualization)
114
hg19
76
GRCh38
Lab
208
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
271 results
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ChIP-seq
RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
tissue
bone element
84
kidney
49
13
skeletal muscle tissue
13
islet of Langerhans
6
6
pancreas
6
+ See 10 more…
cell line
HepG2
58
MIN6
1
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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