Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
141
single cell RNA-seq
86
ChIP-seq
47
WGBS
17
pCHi-C
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
338
Transcription
DNA accessibility
86
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
81
February, 2023
74
May, 2022
56
September, 2020
47
September, 2023
45
May, 2020
18
February, 2021
9
April, 2020
4
March, 2020
3
March, 2023
3
October, 2022
Available data
182
bam
182
bigWig
132
fastq
102
tsv
93
zippedFastqFolder
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
490
Homo sapiens
Biosample type
424
primary cell
66
tissue
cell line
2
stem cell
Organ
112
pancreas
103
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
227
HPAP
206
T1D
47
KPMP
9
LungMap
2
community
1
ITG
Genome assembly (visualization)
185
hg19
183
GRCh38
Lab
227
Klaus Kaestner, Upenn
202
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
3
audit script error
assay_slims!
DNA accessibility
lab.title!
Bing Ren, UCSD
biosample_type!
cell line
award.project!
AMP
BIOSAMPLE
ASSAY
492 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
+ See 36 more…
tissue
kidney
47
islet of Langerhans
7
2
lung
9
thymus
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download