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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
211
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
125
histone modification
124
histone
64
broad histone mark
59
narrow histone mark
47
transcription factor
39
control
8
RNA binding protein
3
chromatin remodeller
Date released
658
February, 2021
328
November, 2017
315
August, 2017
275
May, 2021
232
October, 2019
191
May, 2020
177
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
October, 2017
Available data
278
fastq
272
bam
262
bigWig
132
bed narrowPeak
89
tsv
tagAlign
39
bed broadPeak
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
315
Homo sapiens
Biosample type
220
tissue
53
in vitro differentiated cells
42
primary cell
Organ
167
pancreas
101
connective tissue
48
adipose tissue
32
liver
26
epithelium
11
musculature of body
Project
315
AMP
Genome assembly (visualization)
228
hg19
225
GRCh38
Lab
315
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
lab.title!
Bing Ren, UCSD
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
315 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
33
89
liver
28
3
1
subcutaneous abdominal adipose tissue
28
3
white adipose tissue
12
skeletal muscle tissue
7
4
+ See 2 more…
in vitro differentiated cells
adipocyte
53
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
skeletal muscle myoblast
3
1
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