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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
total RNA-seq
4
Capture-C
1
ChIP-seq
1
Hi-C
1
RNA microarray
Assay category
170
Transcription
DNA accessibility
1
3D chromatin structure
1
DNA binding
Target of assay
1
broad histone mark
1
histone
1
histone modification
Date released
658
February, 2021
328
November, 2017
315
August, 2017
275
May, 2021
232
October, 2019
191
May, 2020
177
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
October, 2017
Available data
113
tsv
57
txt
39
bam
31
bigWig
tagAlign
16
bed narrowPeak
5
bed bed3+
1
hic
Organism
176
Homo sapiens
Biosample type
157
tissue
10
cell line
10
in vitro differentiated cells
Organ
92
heart
58
kidney
8
embryo
6
blood vessel
6
vasculature
3
connective tissue
2
artery
2
epithelium
2
pancreas
1
adipose tissue
Project
177
AMP
Genome assembly (visualization)
18
hg19
15
GRCh38
Lab
117
AMP-T2D consortium
58
Katalin Susztak, Upenn
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_slims!
DNA accessibility
lab.title!
Bing Ren, UCSD
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
177 results
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single cell RNA-seq
total RNA-seq
Capture-C
ChIP-seq
Hi-C
RNA microarray
tissue
kidney
8
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 10 more…
cell line
H1-hESC
8
EndoC_BH1
2
in vitro differentiated cells
neural progenitor cell
7
1
adipocyte
1
osteoblast
1
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