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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
534
ChIP-seq
160
total RNA-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
534
DNA binding
164
Transcription
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
52
August, 2017
50
November, 2018
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
673
bam
582
bigWig
461
fastq
399
bed narrowPeak
352
bigBed narrowPeak
165
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
711
Homo sapiens
Biosample type
369
cell line
316
tissue
15
in vitro differentiated cells
11
primary cell
Organ
711
liver
647
connective tissue
645
pancreas
483
adipose tissue
292
epithelium
276
heart
249
brain
178
vasculature
174
blood vessel
146
bone element
92
artery
81
kidney
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
711
AMP
Genome assembly (visualization)
582
hg19
523
GRCh38
Lab
711
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
711 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
2
tissue
liver
145
147
3
1
1
1
1
1
right lobe of liver
10
3
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
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