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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
17
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
Assay category
DNA accessibility
37
DNA binding
17
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
44
May, 2021
10
February, 2023
6
May, 2022
Available data
6
bam
6
fastq
6
txt
Organism
60
Homo sapiens
Biosample type
primary cell
42
in vitro differentiated cells
13
tissue
5
cell line
Organ
12
pancreas
1
thymus
Project
49
AMP
11
T1D
Lab
3009
AMP-T2D consortium
61
Katalin Susztak, Upenn
60
Kyle Gaulton, UCSD
47
KPMP
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
assay_slims!
DNA accessibility
biosample_type!
primary cell
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
11
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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