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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1006
total RNA-seq
867
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1180
Transcription
867
DNA binding
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
279
August, 2017
222
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
38
March, 2020
27
May, 2022
25
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1606
bam
1453
bigWig
1028
tsv
555
bed narrowPeak
377
bigBed narrowPeak
336
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2190
Homo sapiens
Biosample type
2198
tissue
769
primary cell
631
cell line
351
in vitro differentiated cells
10
stem cell
Organ
529
connective tissue
470
adipose tissue
417
pancreas
328
liver
224
brain
191
heart
146
bone element
146
kidney
85
blood vessel
85
vasculature
73
limb
41
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2132
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1429
GRCh38
1414
hg19
Lab
2041
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
month_released!
July, 2019
BIOSAMPLE
ASSAY
2198 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
1
3
islet of Langerhans
298
71
4
3
4
liver
165
145
1
1
3
1
1
kidney
49
27
64
1
bone element
84
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