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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
93
single cell RNA-seq
62
total RNA-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
94
DNA binding
DNA accessibility
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
92
August, 2021
58
February, 2021
57
April, 2019
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
5
June, 2019
3
February, 2020
3
May, 2021
1
February, 2023
Available data
157
tsv
152
bam
133
bigWig
74
bed narrowPeak
64
bigBed narrowPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
255
Homo sapiens
Biosample type
191
tissue
58
cell line
5
primary cell
1
in vitro differentiated cells
Organ
767
pancreas
752
liver
632
connective tissue
471
adipose tissue
388
epithelium
255
heart
233
brain
181
kidney
168
vasculature
165
blood vessel
147
bone element
90
artery
73
limb
60
blood
60
bodily fluid
51
musculature of body
40
nerve
37
embryo
28
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
255
AMP
Genome assembly (visualization)
136
hg19
132
GRCh38
Lab
255
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
July, 2019
BIOSAMPLE
ASSAY
255 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
pCHi-C
tissue
heart left ventricle
35
18
1
1
1
heart right ventricle
13
17
1
1
1
right cardiac atrium
6
18
1
heart
14
1
2
1
left cardiac atrium
18
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cell line
smooth muscle cell of the coronary artery
6
52
primary cell
cardiac fibroblast
5
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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