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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
89
total RNA-seq
4
RRBS
Assay category
173
DNA binding
89
Transcription
DNA accessibility
4
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
552
February, 2021
298
May, 2021
281
November, 2017
266
August, 2017
215
May, 2020
199
October, 2019
164
July, 2018
97
May, 2019
84
July, 2019
77
December, 2017
65
April, 2019
61
November, 2018
58
September, 2018
49
April, 2018
48
August, 2021
47
October, 2018
33
November, 2019
31
February, 2018
30
December, 2018
28
March, 2020
26
January, 2019
23
June, 2019
6
October, 2017
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
September, 2017
1
March, 2019
1
May, 2023
Available data
260
bigWig
246
fastq
242
bam
132
bed narrowPeak
89
tsv
39
bed broadPeak
38
tagAlign
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
260
Homo sapiens
Biosample type
176
tissue
48
in vitro differentiated cells
42
primary cell
Organ
154
pancreas
62
connective tissue
19
liver
15
musculature of body
14
adipose tissue
14
epithelium
Project
266
AMP
Genome assembly (visualization)
266
hg19
242
GRCh38
Lab
266
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
266 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
tissue
islet of Langerhans
27
89
liver
18
1
skeletal muscle tissue
13
2
pancreas
12
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
48
primary cell
skeletal muscle myoblast
15
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
pancreatic beta cell
7
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