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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
229
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
162
histone modification
161
histone
89
broad histone mark
72
narrow histone mark
42
control
25
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
644
February, 2021
406
November, 2017
333
August, 2017
277
October, 2019
241
May, 2020
238
May, 2021
207
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
July, 2019
96
February, 2023
80
April, 2019
78
November, 2018
76
October, 2018
59
September, 2018
56
September, 2020
52
March, 2020
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
9
April, 2020
8
December, 2019
6
September, 2017
5
March, 2023
4
May, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
January, 2018
1
March, 2019
Available data
225
fastq
219
bam
215
bigWig
90
bed narrowPeak
89
tsv
71
tagAlign
39
bed broadPeak
32
bigBed narrowPeak
26
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
326
Homo sapiens
Biosample type
279
tissue
in vitro differentiated cells
54
primary cell
Organ
183
pancreas
56
adipose tissue
56
connective tissue
52
liver
26
epithelium
26
musculature of body
Project
333
AMP
Genome assembly (visualization)
218
hg19
194
GRCh38
Lab
333
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
333 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
42
89
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 2 more…
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
See all biosamples
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