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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
257
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
162
histone modification
161
histone
87
broad histone mark
73
narrow histone mark
50
control
45
transcription factor
6
RNA binding protein
2
chromatin remodeller
Date released
666
February, 2021
365
May, 2021
361
August, 2017
336
November, 2017
279
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
14
November, 2020
12
October, 2017
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
278
fastq
272
bam
262
bigWig
132
bed narrowPeak
89
tsv
85
tagAlign
bed broadPeak
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
360
Homo sapiens
Biosample type
253
tissue
67
in vitro differentiated cells
41
primary cell
Organ
171
pancreas
122
connective tissue
55
adipose tissue
52
liver
26
epithelium
13
musculature of body
Project
361
AMP
Genome assembly (visualization)
227
hg19
224
GRCh38
Lab
361
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
361 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
36
89
liver
48
3
1
subcutaneous abdominal adipose tissue
35
3
skeletal muscle tissue
9
4
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
skeletal muscle myoblast
2
1
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