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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
ChIP-seq
9
WGBS
6
RRBS
Assay category
296
DNA binding
15
DNA methylation
DNA accessibility
Target of assay
199
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
311
August, 2017
265
October, 2019
192
May, 2021
120
May, 2019
114
August, 2021
107
February, 2021
101
May, 2022
96
February, 2023
94
December, 2017
80
April, 2019
78
November, 2018
74
October, 2018
56
September, 2020
52
May, 2020
47
September, 2023
35
December, 2018
35
July, 2019
33
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
17
March, 2020
15
November, 2019
15
October, 2017
10
November, 2020
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
July, 2018
4
May, 2023
4
October, 2022
1
August, 2018
1
December, 2019
1
March, 2019
Available data
278
fastq
272
bam
262
bigWig
132
bed narrowPeak
tsv
85
tagAlign
39
bed broadPeak
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
304
Homo sapiens
Biosample type
190
tissue
67
in vitro differentiated cells
54
primary cell
Organ
123
connective tissue
94
pancreas
56
adipose tissue
52
liver
26
epithelium
26
musculature of body
Project
311
AMP
Genome assembly (visualization)
177
hg19
153
GRCh38
Lab
311
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
tsv
BIOSAMPLE
ASSAY
311 results
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Clear Filters
ChIP-seq
WGBS
RRBS
tissue
liver
48
3
1
islet of Langerhans
42
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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