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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
89
total RNA-seq
4
RRBS
4
WGBS
Assay category
162
DNA binding
89
Transcription
DNA accessibility
8
DNA methylation
Target of assay
86
histone modification
85
histone
47
transcription factor
45
narrow histone mark
39
broad histone mark
29
control
8
RNA binding protein
3
chromatin remodeller
Date released
312
November, 2017
259
August, 2017
94
December, 2017
78
November, 2018
76
February, 2023
60
October, 2018
59
September, 2018
50
July, 2018
44
April, 2018
39
February, 2018
38
September, 2020
35
December, 2018
30
January, 2019
18
February, 2021
6
May, 2022
6
September, 2017
5
January, 2018
4
August, 2018
3
June, 2018
1
October, 2017
Available data
278
fastq
272
bam
262
bigWig
132
bed narrowPeak
89
tsv
tagAlign
39
bed broadPeak
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
259
Homo sapiens
Biosample type
164
tissue
53
in vitro differentiated cells
42
primary cell
Organ
156
pancreas
70
connective tissue
27
liver
26
epithelium
17
adipose tissue
2
musculature of body
Project
259
AMP
Genome assembly (visualization)
228
hg19
225
GRCh38
Lab
259
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
259 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
WGBS
tissue
islet of Langerhans
22
89
liver
25
1
1
white adipose tissue
12
pancreas
7
adipose tissue
2
3
+ See 1 more…
in vitro differentiated cells
adipocyte
53
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
skeletal muscle myoblast
3
1
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