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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
288
ChIP-seq
9
WGBS
6
RRBS
Assay category
288
DNA binding
15
DNA methylation
DNA accessibility
Target of assay
199
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
RNA binding protein
3
chromatin remodeller
Date released
369
November, 2017
303
August, 2017
265
October, 2019
187
May, 2021
115
May, 2019
113
August, 2021
107
February, 2021
101
May, 2022
96
February, 2023
90
December, 2017
76
April, 2019
63
October, 2018
57
November, 2018
56
September, 2020
52
May, 2020
47
September, 2023
35
July, 2019
35
May, 2024
33
December, 2018
33
September, 2018
27
June, 2019
24
February, 2018
19
January, 2019
17
March, 2020
15
October, 2017
14
November, 2019
10
November, 2020
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
July, 2018
4
May, 2023
4
October, 2022
1
August, 2018
1
December, 2019
1
March, 2019
Available data
270
fastq
264
bam
254
bigWig
125
bed narrowPeak
tsv
85
tagAlign
37
bed broadPeak
31
bed bed3+
30
bigBed narrowPeak
11
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
296
Homo sapiens
Biosample type
188
tissue
63
in vitro differentiated cells
52
primary cell
Organ
119
connective tissue
92
pancreas
56
adipose tissue
52
liver
26
epithelium
26
musculature of body
Project
303
AMP
Genome assembly (visualization)
169
hg19
146
GRCh38
Lab
303
AMP-T2D consortium
Audit category:
38
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
tsv
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
303 results
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Clear Filters
ChIP-seq
WGBS
RRBS
tissue
liver
48
3
1
islet of Langerhans
40
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 2 more…
in vitro differentiated cells
adipocyte
63
primary cell
skeletal muscle myoblast
13
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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