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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
Assay category
243
DNA binding
89
Transcription
14
DNA methylation
DNA accessibility
Target of assay
161
histone modification
160
histone
93
broad histone mark
66
narrow histone mark
45
transcription factor
37
control
6
RNA binding protein
2
chromatin remodeller
Date released
646
February, 2021
397
November, 2017
346
August, 2017
254
October, 2019
233
August, 2021
194
May, 2020
172
May, 2021
120
July, 2018
115
May, 2019
94
December, 2017
80
April, 2019
77
November, 2018
74
October, 2018
69
July, 2019
59
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
27
May, 2022
25
February, 2020
24
February, 2023
15
October, 2017
10
November, 2020
9
April, 2020
6
April, 2018
6
September, 2017
December, 2019
5
January, 2018
4
March, 2023
4
May, 2023
1
August, 2018
1
March, 2019
1
October, 2022
Available data
224
fastq
221
bigWig
219
bam
104
bed narrowPeak
89
tsv
73
tagAlign
33
bed bed3+
26
bed broadPeak
18
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
339
Homo sapiens
Biosample type
279
tissue
67
in vitro differentiated cells
primary cell
Organ
145
pancreas
123
connective tissue
56
adipose tissue
52
liver
26
musculature of body
Project
346
AMP
Genome assembly (visualization)
224
hg19
203
GRCh38
Lab
346
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
month_released!
December, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
346 results
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ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
42
89
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
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in vitro differentiated cells
adipocyte
67
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