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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
89
total RNA-seq
9
WGBS
2
RRBS
Assay category
274
DNA binding
89
Transcription
DNA accessibility
11
DNA methylation
Target of assay
180
histone modification
179
histone
97
broad histone mark
81
narrow histone mark
47
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
666
February, 2021
November, 2017
374
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
113
May, 2019
100
February, 2023
100
May, 2022
94
December, 2017
90
July, 2019
80
April, 2019
78
November, 2018
76
October, 2018
59
September, 2018
56
September, 2020
55
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
23
February, 2020
21
June, 2019
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
276
fastq
272
bam
249
bigWig
119
bed narrowPeak
89
tsv
70
tagAlign
33
bed bed3+
32
bigBed narrowPeak
26
bed broadPeak
13
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
367
Homo sapiens
Biosample type
253
tissue
67
in vitro differentiated cells
54
primary cell
Organ
183
pancreas
123
connective tissue
56
adipose tissue
52
liver
26
epithelium
musculature of body
Project
374
AMP
Genome assembly (visualization)
251
hg19
242
GRCh38
Lab
374
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
November, 2017
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
374 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
42
89
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
pancreas
14
white adipose tissue
12
+ See 1 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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