Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
ChIP-seq
114
total RNA-seq
9
WGBS
6
RRBS
Assay category
296
DNA binding
114
Transcription
15
DNA methylation
DNA accessibility
Target of assay
199
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
278
fastq
272
bam
262
bigWig
132
bed narrowPeak
114
tsv
85
tagAlign
39
bed broadPeak
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
418
Homo sapiens
Biosample type
304
tissue
67
in vitro differentiated cells
54
primary cell
Organ
184
pancreas
125
connective tissue
58
adipose tissue
53
liver
28
musculature of body
26
epithelium
12
brain
3
blood vessel
3
heart
3
limb
3
vasculature
2
artery
1
eye
1
nerve
1
spinal cord
Project
425
AMP
Genome assembly (visualization)
266
hg19
242
GRCh38
Lab
425
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
425 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
42
89
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 27 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
See all biosamples
Download