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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
108
total RNA-seq
9
WGBS
6
RRBS
1
Hi-C
Assay category
270
DNA binding
108
Transcription
DNA accessibility
15
DNA methylation
1
3D chromatin structure
Target of assay
185
histone modification
184
histone
103
broad histone mark
80
narrow histone mark
47
transcription factor
38
control
8
RNA binding protein
3
chromatin remodeller
Date released
634
February, 2021
400
November, 2017
374
August, 2017
355
May, 2021
253
October, 2019
241
May, 2020
231
August, 2021
135
July, 2018
115
May, 2019
87
July, 2019
80
April, 2019
78
November, 2018
75
December, 2017
74
October, 2018
60
February, 2023
60
May, 2022
56
March, 2020
47
September, 2023
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
25
June, 2019
20
November, 2019
16
April, 2018
15
October, 2017
12
September, 2018
9
April, 2020
8
November, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
December, 2019
4
May, 2023
2
June, 2018
1
August, 2018
1
March, 2019
1
October, 2022
Available data
267
bigWig
265
bam
252
fastq
118
bed narrowPeak
108
tsv
85
tagAlign
39
bed broadPeak
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
387
Homo sapiens
Biosample type
299
tissue
67
in vitro differentiated cells
28
primary cell
Organ
218
pancreas
123
connective tissue
56
adipose tissue
52
liver
epithelium
26
musculature of body
Project
394
AMP
Genome assembly (visualization)
272
hg19
247
GRCh38
Lab
394
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
organ_slims!
epithelium
BIOSAMPLE
ASSAY
394 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
Hi-C
tissue
islet of Langerhans
42
108
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
1
pancreatic endocrine cell
12
See all biosamples
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