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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
288
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
288
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
199
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
RNA binding protein
3
chromatin remodeller
Date released
666
February, 2021
392
August, 2017
369
November, 2017
360
May, 2021
281
October, 2019
241
May, 2020
236
August, 2021
168
July, 2018
115
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
90
December, 2017
76
April, 2019
65
October, 2018
60
March, 2020
59
September, 2018
57
November, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
34
November, 2019
33
December, 2018
27
June, 2019
25
February, 2020
24
January, 2019
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
270
fastq
264
bam
254
bigWig
125
bed narrowPeak
89
tsv
85
tagAlign
37
bed broadPeak
31
bed bed3+
30
bigBed narrowPeak
11
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
385
Homo sapiens
Biosample type
277
tissue
63
in vitro differentiated cells
52
primary cell
Organ
181
pancreas
119
connective tissue
56
adipose tissue
52
liver
26
epithelium
26
musculature of body
Project
392
AMP
Genome assembly (visualization)
258
hg19
235
GRCh38
Lab
392
AMP-T2D consortium
Audit category:
38
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
392 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
40
89
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 2 more…
in vitro differentiated cells
adipocyte
63
primary cell
skeletal muscle myoblast
13
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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