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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
523
total RNA-seq
84
RNA microarray
18
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
541
Transcription
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
644
February, 2021
406
November, 2017
333
August, 2017
277
October, 2019
241
May, 2020
238
May, 2021
207
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
July, 2019
96
February, 2023
80
April, 2019
78
November, 2018
76
October, 2018
59
September, 2018
56
September, 2020
52
March, 2020
51
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
9
April, 2020
8
December, 2019
6
September, 2017
5
March, 2023
4
May, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
January, 2018
1
March, 2019
Available data
537
tsv
532
bam
528
bigWig
89
txt
18
fastq
8
tagAlign
6
csv
5
bed narrowPeak
2
bed bed3+
Organism
644
Homo sapiens
Biosample type
537
tissue
87
cell line
in vitro differentiated cells
20
primary cell
Organ
446
connective tissue
386
adipose tissue
142
bone element
58
artery
58
blood vessel
58
heart
58
vasculature
32
epithelium
32
pancreas
8
kidney
2
liver
Project
626
AMP
18
HPAP
Genome assembly (visualization)
530
hg19
528
GRCh38
Lab
626
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
110
inconsistent ontology term
5
audit script error
assay_slims!
DNA accessibility
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
644 results
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total RNA-seq
RNA microarray
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
52
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
primary cell
Langerhans cell
12
pancreatic alpha cell
6
osteoblast
1
1
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