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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
18
small RNA-seq
12
WGBS
9
RRBS
6
Hi-C
3
single cell RNA-seq
Assay category
59
Transcription
21
DNA methylation
DNA accessibility
6
3D chromatin structure
Target of assay
3
control
Date released
576
February, 2021
400
November, 2017
374
August, 2017
355
May, 2021
241
May, 2020
230
October, 2019
229
August, 2021
135
July, 2018
110
May, 2019
86
July, 2019
80
April, 2019
78
November, 2018
75
December, 2017
74
October, 2018
60
February, 2023
60
May, 2022
56
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
June, 2019
23
February, 2020
20
November, 2019
16
April, 2018
15
October, 2017
12
September, 2018
9
April, 2020
8
November, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
December, 2019
4
May, 2023
2
June, 2018
1
August, 2018
1
March, 2019
1
October, 2022
Available data
69
bigWig
68
bam
59
tsv
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3+
2
hdf5
Organism
86
Homo sapiens
Biosample type
69
tissue
17
primary cell
Organ
21
heart
18
connective tissue
16
brain
epithelium
12
adipose tissue
10
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
6
pancreas
5
limb
artery
2
pericardium
1
eye
Project
86
AMP
Genome assembly (visualization)
70
hg19
67
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
epithelium
artery
BIOSAMPLE
ASSAY
86 results
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total RNA-seq
small RNA-seq
WGBS
RRBS
Hi-C
single cell RNA-seq
tissue
heart left ventricle
2
4
1
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 24 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 9 more…
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