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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
41
WGBS
33
single cell RNA-seq
Assay category
DNA accessibility
46
DNA binding
41
DNA methylation
33
Transcription
Target of assay
26
histone
26
histone modification
14
narrow histone mark
12
broad histone mark
11
transcription factor
9
control
2
RNA binding protein
1
chromatin remodeller
Date released
325
May, 2021
324
November, 2017
129
February, 2021
121
August, 2017
86
February, 2023
78
August, 2021
74
May, 2022
62
November, 2018
59
October, 2019
59
September, 2018
56
September, 2020
48
July, 2018
48
May, 2020
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
31
June, 2019
28
December, 2018
23
January, 2019
22
March, 2020
15
November, 2019
10
November, 2020
7
December, 2019
5
January, 2018
5
March, 2023
5
May, 2019
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
74
zippedFastqFolder
46
bam
46
fastq
36
bed narrowPeak
36
bigWig
15
bed bed3+
14
bigBed narrowPeak
Organism
120
Homo sapiens
Biosample type
tissue
74
primary cell
43
in vitro differentiated cells
3
stem cell
Organ
60
epithelium
41
pancreas
15
liver
13
embryo
Project
74
HPAP
46
AMP
Genome assembly (visualization)
41
GRCh38
41
hg19
Lab
74
Klaus Kaestner, Upenn
46
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
assay_slims!
DNA accessibility
biosample_type!
tissue
BIOSAMPLE
ASSAY
120 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
primary cell
Langerhans cell
33
pancreatic alpha cell
25
pancreatic beta cell
16
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
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stem cell
hESC
3
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