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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
single cell RNA-seq
93
total RNA-seq
41
WGBS
22
ChIP-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
233
Transcription
DNA accessibility
41
DNA methylation
22
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
644
February, 2021
406
November, 2017
333
August, 2017
277
October, 2019
241
May, 2020
238
May, 2021
207
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
July, 2019
96
February, 2023
80
April, 2019
78
November, 2018
76
October, 2018
59
September, 2018
56
September, 2020
52
March, 2020
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
9
April, 2020
8
December, 2019
6
September, 2017
5
March, 2023
4
May, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
January, 2018
1
March, 2019
Available data
116
tsv
74
zippedFastqFolder
63
txt
25
bigWig
18
bam
17
bed narrowPeak
6
fastq
4
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
307
Homo sapiens
Biosample type
186
tissue
78
primary cell
44
cell line
in vitro differentiated cells
Organ
92
heart
60
kidney
55
liver
51
pancreas
47
epithelium
8
embryo
6
blood vessel
6
vasculature
2
artery
1
adipose tissue
1
connective tissue
1
musculature of body
Project
234
AMP
74
HPAP
Genome assembly (visualization)
27
hg19
11
GRCh38
Lab
114
AMP-T2D consortium
74
Klaus Kaestner, Upenn
58
Katalin Susztak, Upenn
36
Bing Ren, UCSD
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
308 results
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Clear Filters
single cell RNA-seq
total RNA-seq
WGBS
ChIP-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
1
liver
20
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 13 more…
primary cell
Langerhans cell
33
pancreatic alpha cell
25
pancreatic beta cell
16
hepatocyte
4
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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