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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
7
WGBS
5
total RNA-seq
4
single cell RNA-seq
2
RNA microarray
Assay category
70
DNA binding
DNA accessibility
9
Transcription
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
82
bam
78
fastq
75
bigWig
63
bed narrowPeak
63
bigBed narrowPeak
9
tsv
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
88
Homo sapiens
Biosample type
61
cell line
19
tissue
6
primary cell
2
in vitro differentiated cells
Organ
55
liver
15
blood
15
bodily fluid
8
spleen
6
epithelium
4
pancreas
3
kidney
Project
88
AMP
Genome assembly (visualization)
75
GRCh38
66
hg19
Lab
88
AMP-T2D consortium
Audit category:
4
audit script error
2
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
88 results
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Clear Filters
ChIP-seq
WGBS
total RNA-seq
single cell RNA-seq
RNA microarray
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
2
liver
4
body of pancreas
2
pancreas
2
kidney
1
+ See 2 more…
primary cell
hepatocyte
5
pancreatic cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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