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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
144
ChIP-seq
7
WGBS
2
total RNA-seq
1
single cell RNA-seq
Assay category
144
DNA binding
DNA accessibility
7
DNA methylation
3
Transcription
Target of assay
79
transcription factor
35
control
32
RNA binding protein
30
histone
30
histone modification
19
broad histone mark
16
recombinant protein
11
narrow histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
153
bam
138
fastq
117
bigWig
108
bed narrowPeak
108
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
tsv
1
csv
Organism
154
Homo sapiens
Biosample type
90
tissue
61
cell line
3
primary cell
Organ
57
pancreas
50
liver
23
adipose tissue
23
connective tissue
15
blood
15
bodily fluid
8
spleen
2
epithelium
Project
154
AMP
Genome assembly (visualization)
117
GRCh38
108
hg19
Lab
154
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
154 results
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Clear Filters
ChIP-seq
WGBS
total RNA-seq
single cell RNA-seq
tissue
body of pancreas
33
2
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
spleen
6
2
+ See 2 more…
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic acinar cell
2
pancreatic cell
1
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