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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
total RNA-seq
10
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
DNA accessibility
98
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
76
fastq
8
tsv
4
bam
4
bigWig
4
txt
Organism
113
Homo sapiens
Biosample type
80
primary cell
18
tissue
12
cell line
4
in vitro differentiated cells
Organ
53
pancreas
46
epithelium
8
connective tissue
4
bone element
4
eye
4
skeleton
1
heart
Project
76
HPAP
28
AMP
10
T1D
Genome assembly (visualization)
4
GRCh38
4
hg19
Lab
76
Klaus Kaestner, Upenn
18
AMP-T2D consortium
10
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
114 results
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Clear Filters
total RNA-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
osteoblast
4
tissue
islet of Langerhans
5
4
pigmented layer of retina
2
retina
2
acetabular part of hip bone
1
heart
1
+ See 3 more…
cell line
EndoC_BH1
6
3
2
1
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
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