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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
ChIP-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
Assay category
65
Transcription
27
DNA methylation
DNA accessibility
15
DNA binding
8
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
2
narrow histone mark
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
83
bigWig
82
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
14
tagAlign
9
fastq
6
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
4
hdf5
3
bed broadPeak
Organism
115
Homo sapiens
Biosample type
84
tissue
31
primary cell
Organ
31
brain
21
heart
18
connective tissue
13
epithelium
12
adipose tissue
10
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
6
pancreas
5
limb
2
artery
2
pericardium
1
eye
Project
115
AMP
Genome assembly (visualization)
90
hg19
79
GRCh38
Lab
115
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
115 results
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total RNA-seq
small RNA-seq
ChIP-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
tissue
brain
15
1
heart left ventricle
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
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primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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