Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
130
total RNA-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
Assay category
176
DNA binding
132
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
52
broad histone mark
47
narrow histone mark
46
transcription factor
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
125
May, 2021
67
August, 2017
30
August, 2021
30
December, 2017
26
February, 2018
22
February, 2021
8
March, 2020
4
February, 2023
4
October, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
245
bam
225
bigWig
125
tsv
113
fastq
96
bed narrowPeak
40
tagAlign
18
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
322
Homo sapiens
Biosample type
2267
tissue
800
primary cell
623
cell line
322
in vitro differentiated cells
10
stem cell
Organ
79
connective tissue
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
322
AMP
Genome assembly (visualization)
233
hg19
226
GRCh38
3
hg18
Lab
278
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
99
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
assay_slims!
DNA accessibility
organ_slims!
embryo
BIOSAMPLE
ASSAY
322 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
cardiac precursors (cardiac muscle cell)
19
1
+ See 23 more…
See all biosamples
Download