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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
53
total RNA-seq
37
ChIP-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
Hi-C
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
DNA accessibility
118
Transcription
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
60
August, 2021
47
September, 2023
23
April, 2019
17
October, 2019
8
February, 2021
3
July, 2019
3
May, 2023
2
December, 2019
2
March, 2020
Available data
62
txt
42
bam
32
bigWig
27
bed narrowPeak
18
bigBed narrowPeak
16
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
165
Homo sapiens
Biosample type
148
tissue
17
cell line
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
118
AMP
47
KPMP
Genome assembly (visualization)
34
hg19
32
GRCh38
Lab
61
Katalin Susztak, Upenn
55
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
6
audit script error
assay_slims!
DNA accessibility
organ_slims!
epithelium
BIOSAMPLE
ASSAY
165 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snDrop-seq
STARR-seq
pCHi-C
Hi-C
RNA microarray
RRBS
small RNA-seq
tissue
kidney
64
49
27
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 1 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
RCC 7860 VHL
1
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