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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
243
total RNA-seq
187
single cell RNA-seq
47
WGBS
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
Assay category
432
Transcription
DNA accessibility
274
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
235
histone
235
histone modification
122
broad histone mark
113
narrow histone mark
33
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
27
October, 2019
26
July, 2019
26
June, 2019
20
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
498
bigWig
486
bam
349
fastq
254
tsv
223
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
54
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
790
Homo sapiens
Biosample type
2060
tissue
790
primary cell
573
cell line
350
in vitro differentiated cells
10
stem cell
Organ
315
epithelium
275
pancreas
31
connective tissue
30
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
366
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
513
hg19
453
GRCh38
Lab
331
AMP-T2D consortium
231
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
34
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
organ_slims!
heart
BIOSAMPLE
ASSAY
790 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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