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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1836
ChIP-seq
1528
total RNA-seq
363
single cell RNA-seq
87
RNA microarray
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
2
February, 2023
Organism
12
Homo sapiens
Biosample type
8
cell line
4
tissue
Organ
10
pancreas
6
epithelium
Project
10
AMP
2
T1D
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
nerve
BIOSAMPLE
ASSAY
12 results
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MeRIP-seq
HiChIP
cell line
EndoC_BH1
6
2
tissue
islet of Langerhans
4