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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
942
total RNA-seq
731
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
23
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1138
Transcription
731
DNA binding
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
158
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
August, 2017
222
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
47
September, 2023
40
May, 2024
39
May, 2021
37
March, 2020
27
May, 2022
25
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1496
bam
1374
bigWig
985
tsv
533
bed narrowPeak
359
bigBed narrowPeak
179
tagAlign
165
fastq
156
txt
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
9
bed broadPeak
6
csv
2
bed bed3+
1
bedpe
1
tagAlign bed3+
Organism
2025
Homo sapiens
Biosample type
2026
tissue
746
primary cell
631
cell line
284
in vitro differentiated cells
10
stem cell
Organ
483
connective tissue
424
adipose tissue
284
liver
278
pancreas
247
heart
233
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
40
nerve
32
artery
25
eye
23
spleen
22
musculature of body
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1961
AMP
47
KPMP
9
LungMap
9
T1D
Genome assembly (visualization)
1369
GRCh38
1291
hg19
Lab
1830
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
assay_slims!
DNA accessibility
organ_slims!
thymus
month_released!
August, 2017
BIOSAMPLE
ASSAY
2026 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
liver
167
97
1
1
1
1
islet of Langerhans
203
29
6
4
3
1
4
kidney
49
27
64
1
1
bone element
84
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