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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
44
ChIP-seq
1
pCHi-C
Assay category
127
Transcription
44
DNA binding
DNA accessibility
Target of assay
22
histone
22
histone modification
16
transcription factor
12
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
588
February, 2021
397
November, 2017
346
August, 2017
231
October, 2019
227
August, 2021
194
May, 2020
172
May, 2021
120
July, 2018
94
December, 2017
80
April, 2019
77
November, 2018
74
October, 2018
65
May, 2019
64
July, 2019
56
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
27
May, 2022
24
February, 2023
22
February, 2020
15
October, 2017
10
November, 2020
9
April, 2020
6
April, 2018
6
September, 2017
5
December, 2019
5
January, 2018
4
March, 2023
4
May, 2023
1
August, 2018
1
March, 2019
1
October, 2022
Available data
128
bam
127
bigWig
121
tsv
6
bed narrowPeak
6
tagAlign
Organism
172
Homo sapiens
Biosample type
primary cell
127
in vitro differentiated cells
40
tissue
5
cell line
Organ
45
pancreas
10
epithelium
3
heart
2
embryo
1
connective tissue
1
thymus
Project
170
AMP
2
T1D
Genome assembly (visualization)
127
GRCh38
127
hg19
Lab
128
AMP-T2D consortium
44
Kyle Gaulton, UCSD
Audit category:
73
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
vasculature
biosample_type!
primary cell
BIOSAMPLE
ASSAY
172 results
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total RNA-seq
ChIP-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
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tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
1
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