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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
83
ChIP-seq
17
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
83
DNA binding
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
57
April, 2019
19
July, 2019
16
May, 2019
8
October, 2019
7
March, 2020
5
June, 2019
3
May, 2021
2
February, 2020
1
February, 2023
Available data
113
tsv
104
bam
89
bigWig
67
bed narrowPeak
61
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
210
Homo sapiens
Biosample type
201
tissue
8
primary cell
1
in vitro differentiated cells
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
276
heart
249
brain
191
kidney
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
210
AMP
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
210
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
vasculature
BIOSAMPLE
ASSAY
210 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
4
1
1
1
heart right ventricle
17
13
1
2
1
1
right cardiac atrium
18
6
1
1
heart
1
14
4
1
1
1
left cardiac atrium
18
+ See 9 more…
primary cell
cardiac fibroblast
5
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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