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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
17
total RNA-seq
3
Hi-C
3
pCHi-C
2
WGBS
1
small RNA-seq
Assay category
123
DNA binding
111
Transcription
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
16
May, 2019
11
July, 2019
8
October, 2019
7
March, 2020
5
June, 2019
3
May, 2021
2
February, 2020
1
February, 2023
Available data
129
bigWig
113
tsv
107
bed narrowPeak
104
bam
61
bigBed narrowPeak
8
bed bedMethyl
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
242
Homo sapiens
Biosample type
234
tissue
7
primary cell
1
in vitro differentiated cells
Organ
767
pancreas
759
liver
647
connective tissue
481
adipose tissue
395
epithelium
308
heart
247
brain
187
kidney
vasculature
173
blood vessel
147
bone element
92
artery
77
limb
60
blood
60
bodily fluid
57
musculature of body
40
nerve
37
embryo
28
eye
21
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
242
AMP
Genome assembly (visualization)
122
GRCh38
86
hg19
Lab
202
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
vasculature
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
242 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
pCHi-C
WGBS
small RNA-seq
tissue
heart left ventricle
35
18
3
1
1
2
left cardiac atrium
40
18
heart right ventricle
13
17
1
1
1
right cardiac atrium
6
18
1
heart
14
1
4
1
1
+ See 9 more…
primary cell
cardiac fibroblast
5
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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