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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
2
WGBS
1
pCHi-C
Assay category
77
DNA binding
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
23
November, 2018
22
January, 2019
1
March, 2020
Available data
79
bam
79
fastq
65
bigWig
63
bed narrowPeak
63
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
tsv
Organism
80
Homo sapiens
Biosample type
59
cell line
21
tissue
Organ
702
liver
700
pancreas
617
connective tissue
471
adipose tissue
352
epithelium
276
heart
176
kidney
152
vasculature
149
blood vessel
147
bone element
132
brain
86
artery
63
limb
59
blood
59
bodily fluid
48
musculature of body
32
nerve
29
embryo
26
eye
21
spleen
13
vein
10
lung
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
65
GRCh38
63
hg19
Lab
80
AMP-T2D consortium
Audit category:
1
inconsistent control
assay_slims!
DNA accessibility
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
WGBS
pCHi-C
cell line
GM12878
59
tissue
spleen
18
2
1
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