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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
141
ChIP-seq
6
WGBS
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
141
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
70
histone
70
histone modification
40
broad histone mark
39
transcription factor
32
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
448
February, 2021
123
August, 2017
23
October, 2018
10
July, 2019
4
February, 2023
3
August, 2021
2
February, 2020
2
March, 2020
1
August, 2018
1
May, 2021
1
May, 2023
1
October, 2019
Available data
551
bam
527
bigWig
463
tsv
94
fastq
49
bed narrowPeak
22
tagAlign
13
bed bed3+
6
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
618
Homo sapiens
Biosample type
539
tissue
79
in vitro differentiated cells
primary cell
1
stem cell
Organ
751
liver
619
connective tissue
498
pancreas
481
adipose tissue
266
heart
233
brain
167
kidney
148
blood vessel
148
vasculature
146
bone element
90
artery
86
epithelium
78
limb
60
blood
60
bodily fluid
48
musculature of body
40
nerve
37
embryo
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
619
AMP
Genome assembly (visualization)
529
hg19
528
GRCh38
Lab
617
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
DNA accessibility
biosample_type!
primary cell
BIOSAMPLE
ASSAY
619 results
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total RNA-seq
ChIP-seq
WGBS
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
+ See 3 more…
in vitro differentiated cells
adipocyte
5
67
1
immature adipocyte
2
cardiac fibroblast
1
osteoblast
1
preadipocyte
1
+ See 1 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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