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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
34
ChIP-seq
2
single cell RNA-seq
1
RRBS
Assay category
59
Transcription
DNA accessibility
34
DNA binding
1
DNA methylation
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
23
October, 2019
5
May, 2019
4
July, 2019
2
August, 2021
2
February, 2020
Available data
89
bam
80
bigWig
59
tsv
25
bed narrowPeak
21
bigBed narrowPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
94
Homo sapiens
Biosample type
58
cell line
33
tissue
3
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
81
hg19
80
GRCh38
Lab
94
AMP-T2D consortium
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
94 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
23
coronary artery
1
5
pulmonary artery
2
pericardium
1
primary cell
endothelial cell of coronary artery
1
pericardium fibroblast
1
smooth muscle cell of the coronary artery
1
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