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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
60
total RNA-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
66
Transcription
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
58
February, 2021
50
May, 2019
23
October, 2019
6
August, 2021
6
July, 2019
3
February, 2020
3
March, 2020
Available data
138
bam
119
bigWig
67
tsv
61
bed narrowPeak
57
bigBed narrowPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
149
Homo sapiens
Biosample type
90
tissue
58
cell line
1
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
AMP
Genome assembly (visualization)
119
GRCh38
119
hg19
Lab
149
AMP-T2D consortium
assay_slims!
DNA accessibility
organ_slims!
epithelium
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
tibial artery
23
1
aorta
13
1
4
2
1
1
ascending aorta
16
2
thoracic aorta
16
2
coronary artery
5
1
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cell line
smooth muscle cell of the coronary artery
6
52
primary cell
smooth muscle cell of the coronary artery
1
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