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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
339
ChIP-seq
Assay category
339
DNA binding
Target of assay
420
transcription factor
389
histone
389
histone modification
198
broad histone mark
190
narrow histone mark
156
control
89
recombinant protein
RNA binding protein
34
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
210
November, 2017
36
November, 2018
25
December, 2018
18
August, 2017
11
May, 2021
10
August, 2021
9
December, 2017
8
January, 2019
7
October, 2019
5
February, 2021
Available data
329
bigWig
321
bam
320
bed narrowPeak
306
fastq
272
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
9
tagAlign
6
bed bed3+
2
tar
Organism
339
Homo sapiens
Biosample type
301
cell line
tissue
38
in vitro differentiated cells
Organ
246
liver
43
blood
43
bodily fluid
18
connective tissue
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
3
embryo
1
epithelium
1
pancreas
Project
339
AMP
Genome assembly (visualization)
326
hg19
287
GRCh38
Lab
322
AMP-T2D consortium
10
Bing Ren, UCSD
7
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
1
inconsistent control
Audit category:
15
missing controlled_by
Audit category:
19
inconsistent control read length
5
inconsistent control run_type
assay_slims!
DNA accessibility
target.investigated_as!
RNA binding protein
biosample_type!
tissue
BIOSAMPLE
ASSAY
339 results
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Clear Filters
ChIP-seq
cell line
HepG2
246
GM12878
43
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
+ See 2 more…
in vitro differentiated cells
adipocyte
18
embryonic stem cell
7
cardiomyocytes
3
pancreatic endoderm
3
Posterior foregut
2
+ See 3 more…
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